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Leung Research Group at the University of Melbourne
We are part of the School of Chemistry and the Bio21 Molecular Science and Biotechnology Institute at the University of Melbourne.
We conduct multidisciplinary research, drawing on the fields of chemistry, biochemistry, biophysical chemistry, enzymology, molecular biology and structural biology, to understand the complex relationships between protein structure, function and modulation. Our goal is to utilise the knowledge that we generate to help solve some of the world’s most urgent challenges.
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Our Research
The Leung Research Group focuses on the enzymology that involves in protein function modulation. We apply a range of biophysical, chemical biology and structural biology techniques to enable our discoveries.
Metabolic regulation of protein functions
The ability to maintain homeostasis is critical to all forms of life. One mechanism through which this is achieved is the fine-tuning of cellular enzyme activities. In our group, we study how posttranslational modifications and metabolites affect the structure, activity and function of proteins and enzymes. These allow us to understand how different biochemical pathways signal and interact with one another to maintain stability in response to stress conditions. We are currently studying the enzymes that are involved in the regulation of carbon metabolism in Mycobacterium tuberculosis to understand how the pathogen survives inside the infected host with limited nutrients. Another system that we are studying is the plant ethylene-forming enzyme. We are presently investigating the mechanisms and structures of the different enzyme isoforms with a view to developing a detailed understanding of their roles in plant growth and development.
Enzyme technology for bioremediation
Enzymes are highly efficient catalysts that speed up chemical transformations under mild conditions. In our group, we study how we could harness the incredible catalytic prowess of enzymes as green biocatalysts to degrade environmental pollutants. We are especially interested in laccases, a class of multi-copper oxidase enzymes that catalyze one-electron oxidation of aromatic amine and phenolic substrates. Currently, we are studying how laccases mediate the degradation of organic pollutants at a molecular level to understand their mechanisms of catalysis. We also characterize the degradation products under different reaction conditions to investigate plausible degradation pathways.
Inhibitor discovery strategies and applications
The ability to modulate the activity of enzymes using natural or synthetic compounds has enormous potential in areas such as medicine. An important step in the early stages of inhibitor development is the identification and characterization of ligands that bind to the target. Our laboratory specializes in the application of biophysical techniques, especially NMR spectroscopy, for ligand screening and to study protein-ligand interactions and enzyme inhibition. A current interest is the development of inhibitors for lipid A phosphoethanolamine transferases. Such compounds have potential to be used as adjuvants to reverse bacterial resistance to polymyxins, a class of last-line antibiotics to treat multidrug-resistant infections.
Publications
▪ Journal Articles
▪ Book Chapters
▪ Edited Books
▪ Statistics
Journal Articles
76
Nuske, M. R.; Zhong, J.; Huang, R.; Sarojini, V.; Chen, J. L. Y.; Squire, C. J.; Blaskovich, M. A. T.; Leung, I. K. H. Adjuvant Strategies to Tackle Mcr-Mediated Polymyxin Resistance. RSC Med. Chem. 2024. DOI: 10.1039/D4MD00654B
75
Harris, B. A.; Zhou, J.; Clarke, B. O.; Leung, I. K. H. Enzymatic Degradation of PFAS: Current Status and Ongoing Challenges. ChemSusChem 2024, e202401122. DOI: 10.1002/cssc.202401122
74
Ghosh, S.; Melton, L. D.; Kihara, S.; Huang, R.; Leung, I. K. H.; Rekas, A.; Knott, R.; Seal, C.; Nieuwoudt, M.; McGillivray, D. J. Probing the Binding Sites of Bioactives with β-Lactoglobulin at Different Gastrointestinal pHs. Food Hydrocoll. 2024, 153, 110040. DOI: 10.1016/j.foodhyd.2024.110040
73
Eurtivong, C.; Leung, E.; Sharma, N.; Leung, I. K. H.; Reynisson, J. Phosphatidylcholine-Specific Phospholipase C as a Promising Drug Target. Molecules 2023, 28, 5637. DOI: 10.3390/molecules28155637
72
Huang, E. Y.-W.; Kwai, B. X. C.; Bhusal, R. P.; Bashiri, G.; Leung, I. K. H. Mycobacterium tuberculosis Rv1916 is an Acetyl-CoA-Binding Protein. ChemBioChem 2023, 24, e202300162. DOI: 10.1002/cbic.202300162
71
Zhang, S.; De Leon Rodriguez, L. M.; Li, F. F.; Huang, R.; Leung, I. K. H.; Harris, P.; Brimble. M. A. A Novel Tyrosine Hyperoxidation Enables Selective Peptide Cleavage. Chem. Sci. 2022, 13, 2753–2763. DOI: 10.1039/D1SC06216F
70
Shishodia, S.; Demetriades, M.; Zhang, D.; Tam, N. Y.; Maheswaran, P.; Clunie-O’Connor, C.; Tumber, A.; Leung, I. K. H.; Ng, Y. M.; Leissing, T. M.; El-Sagheer, A. H.; Salah, E.; Brown, T.; Aik, W. S.; McDonough, M. A.; Schofield, C. J. Structure-Based Design of Selective Fat Mass and Obesity Associated Protein (FTO) Inhibitors. J. Med. Chem. 2021, 64, 16609–16625. DOI: 10.1021/acs.jmedchem.1c01204
69
Sharma, N.; Leung, I. K. H. Novel Thermophilic Bacterial Laccase for the Degradation of Aromatic Organic Pollutants. Front. Chem. 2021, 9, 711345. DOI: 10.3389/fchem.2021.711345
68
Sharma, N.; Leung, I. K. H. Characterisation and Optimisation of a Novel Laccase from Sulfitobacter indolifex for the Decolourisation of Organic Dyes. Int. J. Biol. Macromol. 2021, 190, 574–584. DOI: 10.1016/j.ijbiomac.2021.09.003
67
Leung, E.; Patel, J.; Hollywood, J. A.; Zafar, A.; Tomek, P.; Barker, D.; Pilkington, L. I.; van Rensburg, M.; Langley, R. J.; Helsby, N. A.; Squire, C. J.; Baguley, B. C.; Denny, W. A.; Reynisson, J.; Leung, I. K. H. Validating TDP1 as an Inhibition Target for the Development of Chemosensitizers for Camptothecin-Based Chemotherapy Drugs. Oncol. Ther. 2021, 9, 541–556. DOI: 10.1007/s40487-021-00158-0
66
Mbenza, N. M.; Nasarudin, N.; Vadakkedath, P. G.; Patel, K.; Ismail, A. Z.; Hanif, M.; Wright, L. J.; Sarojini, V.; Hartinger, C. G.; Leung, I. K. H. Carbon Monoxide is an Inhibitor of HIF Prolyl Hydroxylase Domain 2. ChemBioChem 2021, 22, 2521–2525. DOI: 10.1002/cbic.202100181
65
Mak, O. W.; Sharma, N.; Reynisson, J.; Leung, I. K. H. Discovery of Novel Hsp90 C-Terminal Domain Inhibitors that Disrupt Co-Chaperone Binding. Bioorg. Med. Chem. Lett. 2021, 38, 127857. DOI: 10.1016/j.bmcl.2021.127857
64
Sharma, N.; Langley, R. J.; Eurtivong, C.; Leung, E.; Dixon, R. J.; Paulin, E. K.; Rees, S. W. P.; Pilkington, L. I.; Barker, D.; Reynisson, J.; Leung, I. K. H. An Optimised MALDI-TOF Assay for Phosphatidylcholine-Specific Phospholipase C. Anal. Methods 2021, 13, 491–496. DOI: 10.1039/D0AY02208J
63
Kwai, B. X. C.; Collins, A. J.; Middleditch, M. J.; Sperry, J.; Bashiri, G.; Leung, I. K. H. Itaconate is a Covalent Inhibitor of the Mycobacterium tuberculosis Isocitrate Lyase. RSC Med. Chem. 2021, 12, 57–61. DOI: 10.1039/D0MD00301H
62
Correddu, D.; Sharma, N.; Kaur, S.; Varnava, K. G.; Mbenza, N. M.; Sarojini, V.; Leung, I. K. H. An Investigation into the Effect of Ribosomal Protein S15 Phosphorylation to its Intermolecular Interactions by Using Phosphomimetic Mutant. Chem. Commun. 2020, 56, 7857–7860. DOI: 10.1039/D0CC01618G
61
McLarin, M.-A.; Leung, I. K. H. Substrate Specificity of Polyphenol Oxidase. Crit. Rev. Biochem. Mol. Biol. 2020, 55, 274–308. DOI: 10.1080/10409238.2020.1768209
60
Pilkington, L. I.; Sparrow, K.; Rees, S. W. P.; Paulin, E. K.; van Rensburg, M.; Xu, C. S.; Langley, R. J.; Leung, I. K. H.; Reynisson, J.; Leung, E.; Barker, D. Development, Synthesis and Biological Investigation of a Novel Class of Potent PC-PLC Inhibitors. Eur. J. Med. Chem. 2020, 191, 112162. DOI: 10.1016/j.ejmech.2020.112162
59
Mohan, A.; Hadi, J.; Gutierrez-Maddox, N.; Li, Y.; Leung, I. K. H.; Gao, Y.; Shu, Q.; Quek, S.-Y. Sensory, Microbiological and Physicochemical Characterisation of Functional Manuka Honey Yogurts Containing Probiotic Lactobacillus reuteri DPC16. Foods 2020, 9, 106. DOI: 10.3390/foods9010106
58
Eurtivong, C.; Pilkington, L. I.; van Rensburg, M.; White, R. M.; Brar, H. K.; Rees, S.; Paulin, E. K.; Xu, C. S.; Sharma, N.; Leung, I. K. H.; Leung, E.; Barker, D.; Reynisson, J. Discovery of Novel Phosphatidylcholine-Specific Phospholipase C Drug-like Inhibitors as Potential Anticancer Agents. Eur. J. Med. Chem. 2020, 187, 111919. DOI: 10.1016/j.ejmech.2019.111919
57
Correddu, D.; Montaño López, J. d. J.; Angermayr, S. A.; Middleditch, M. J.; Payne, L. S.; Leung, I. K. H. Effect of Consecutive Rare Codons on the Recombinant Production of Human Proteins in Escherichia coli. IUBMB Life 2020, 72, 266–274. DOI: 10.1002/iub.2162
56
Khomenko, T. M.; Zakharenko, A. L.; Chepanova, A. A.; Ilina, E. S.; Zakharova, O. D.; Kaledin, V. I.; Nikolin, V. P.; Popova, N. A.; Korchagina, D. V.; Reynisson, J.; Chand, R.; Ayine-Tora, D. M.; Patel, J.; Leung, I. K. H.; Volcho, K. P.; Salakhutdinov, N. F.; Lavrik, O. I. Promising New Inhibitors of Tyrosyl-DNA Phosphodiesterase I (Tdp 1) Combining 4-Arylcoumarin and Monoterpenoid Moieties as Components of Complex Antitumor Therapy. Int. J. Mol. Sci. 2020, 21, 126. DOI: 10.3390/ijms21010126
55
Mak, O. W.; Chand, R.; Reynisson, J.; Leung, I. K. H. Identification of Isoform-Selective Ligands for the Middle Domain of Heat Shock Protein 90 (Hsp90). Int. J. Mol. Sci. 2020, 20, 5333. DOI: 10.3390/ijms20215333
54
Filimonov, A. S.; Chepanova, A. A.; Luzina, O. A.; Zakharenko, A. L.; Zakharova, O. D.; Ilina, E. S.; Dyrkheeva, N. S.; Kuprushkin, M. S.; Kolotaev, A. V.; Khachatryan, D. S.; Patel, J.; Leung, I. K. H.; Chand, R.; Ayine‐Tora, D. M.; Reynisson, J.; Volcho, K. P.; Salakhutdinov, N. F.; Lavrik, O. I. New Hydrazinothiazole Derivatives of Usnic Acid as Potent Tdp1 Inhibitors. Molecules 2019, 24, 3711. DOI: 10.3390/molecules24203711
53
Bhusal, R. P.; Jiao, W.; Kwai, B. X. C.; Reynisson, J.; Collins, A. J.; Sperry, J.; Bashiri, G.; Leung, I. K. H. Acetyl-CoA-Mediated Activation of Mycobacterium tuberculosis Isocitrate Lyase 2. Nat. Commun. 2019, 10, 4639. DOI: 10.1038/s41467-019-12614-7
52
Li, Y.; McLarin, M.-A.; Middleditch, M. J.; Morrow, S. J.; Kilmartin, P. A.; Leung, I. K. H. An Approach to Recombinantly Produce Mature Grape Polyphenol Oxidase. Biochimie 2019, 165, 40–47. DOI: 10.1016/j.biochi.2019.07.002
51
Chepanova, A. A.; Mozhaitsev, E. S.; Munkuev, A. A.; Suslov, E. V.; Korchagina, D. V.; Zakharova, O. D.; Zakharenko, A. L.; Patel, J.; Ayine-Tora, D. M.; Reynisson, J.; Leung, I. K. H.; Volcho, K. P.; Salakhutdinov, N. F.; Lavrik, O. I. The Development of Tyrosyl-DNA Phosphodiesterase 1 Inhibitors. Combination of Monoterpene and Adamantine Moieties via Amide or Thioamides Bridges. Appl. Sci. 2019, 9, 2767. DOI: 10.3390/app9132767
50
Correddu, D.; Montaño López, J. d. J.; Vadakkedath, P. G.; Lai, A.; Pernes, J. I.; Watson, P. R.; Leung, I. K. H. An Improved Method for the Heterologous Production of Soluble Human Ribosomal Proteins in Escherichia coli. Sci. Rep. 2019, 9, 8884. DOI: 10.1038/s41598-019-45323-8
49
Correddu, D.; Leung, I. K. H. Targeting mRNA Translation in Parkinson’s Disease. Drug Discov. Today 2019, 24, 1295–1303. DOI: 10.1016/j.drudis.2019.04.003
48
Mozhaitsev, E. S.; Zakharenko, A. L.; Suslov, E. V.; Korchagina, D. V.; Zakharova, O. D.; Vasil’eva, I. A.; Chepanova, A. A.; Black, E.; Patel, J.; Chand, R.; Reynisson, J.; Leung, I. K. H.; Volcho, K. P.; Salakhutdinov, N. F.; Lavrik, O. I. Novel Inhibitors of DNA Repair Enzyme TDP1 Combining Monoterpenoid and Adamantane Fragments. Anti-Cancer Agents Med. Chem. 2019, 19, 463–472. DOI: 10.2174/1871520619666181207094243
47
Zakharenko, A. L.; Luzina, O. A.; Sokolov, D. N.; Kaledin, V. I.; Nikolin, V. P.; Popova, N. A.; Patel, J.; Zakharova, O. D.; Chepanova, A. A.; Zafar, A.; Reynisson, J.; Leung, E.; Leung, I. K. H.; Volcho, K. P.; Salakhutdinov, N. F.; Lavrik, O. I. Novel Tyrosyl-DNA Phosphodiesterase 1 Inhibitors Enhance the Therapeutic Impact of Topoteсan on In Vivo Tumor Models. Eur. J. Med. Chem. 2019, 161, 581–593. DOI: 10.1016/j.ejmech.2018.10.055
46
Son, S. J.; Huang, R.; Squire, C. J.; Leung, I. K. H. MCR-1: A Promising Target for Structure-Based Design of Inhibitors to Tackle Polymyxin Resistance. Drug Discov. Today 2019, 24, 206–216. DOI: 10.1016/j.drudis.2018.07.004
45
Abboud, M. I.; Chowdhury, R.; Leung, I. K. H.; Lippl, K.; Loenarz, C.; Claridge, T. D. W.; Schofield, C. J. Studies on the Substrate Selectivity of the Hypoxia-Inducible Factor Prolyl Hydroxylase 2 Catalytic Domain. ChemBioChem 2018, 19, 2262–2267. DOI: 10.1002/cbic.201800246
44
Li-Zhulanov, N. S.; Zakharenko, A. L.; Chepanova, A. A.; Patel, J.; Zafar, A.; Volcho, K. P.; Salakhutdinov, N. F.; Reynisson, J.; Leung, I. K. H.; Lavrik, O. I. A Novel Class of Tyrosyl-DNA Phosphodiesterase 1 Inhibitors That Contains the Octahydro-2H-chromen-4-ol Scaffold. Molecules 2018, 23, 2468. DOI: 10.3390/molecules23102468
43
Zhang, S.; De Leon Rodriguez, L. M.; Huang, R.; Leung, I. K. H.; Harris, P. W. R.; Brimble, M. A. Total Synthesis of the Proposed Structure of Talarolide A. Org. Biomol. Chem. 2018, 16, 5286–5293. DOI: 10.1039/C8OB01230J
42
McAllister, T. E.; Yeh, T.-L.; Abboud, M. I.; Leung, I. K. H.; Hookway, E. S.; King, O. N. F.; Bhushan, B.; Williams, S. T.; Hopkinson, R. J.; Muenzel, M.; Loik, N. D.; Chowdhury, R.; Oppermann, U.; Claridge, T. D. W.; Goto, Y.; Suga, H.; Schofield, C. J.; Kawamura, A. Non-Competitive Cyclic Peptides for Targeting Enzyme-Substrate Complexes. Chem. Sci. 2018, 9, 4569–4578. DOI: 10.1039/C8SC00286J
41
Abboud, M. I.; McAllister, T. E.; Leung, I. K. H.; Chowdhury, R.; Jorgensen, C.; Domene, C.; Mecinović, J.; Lippl, K.; Hancock, R. L.; Hopkinson, R. J.; Kawamura, A.; Claridge, T. D. W.; Schofield, C. J. 2-Oxoglutarate Regulates Binding of Hydroxylated Hypoxia-Inducible Factor to Prolyl Hydroxylase Domain 2. Chem. Commun. 2018, 54, 3130–3133. DOI: 10.1039/c8cc00387d
40
Zhang, S.; De Leon Rodriguez, L. M.; Leung, I. K. H.; Cook, G. M.; Harris, P. W.; Brimble, M. A. Total Synthesis and Conformational Study of Callyaerin A: Anti-Tubercular Cyclic Peptide Bearing a Rare Rigidifying (Z)-2,3-Diaminoacrylamide Moiety. Angew. Chem. Int. Ed. 2018, 57, 3631–3635. DOI: 10.1002/anie.201712792
39
Mbenza, N. M.; Vadakkedath, P. G.; McGillivray, D. J.; Leung, I. K. H. NMR Studies of the Non-Haem Fe(II) and 2-Oxoglutarate-Dependent Oxygenases. J. Inorg. Biochem. 2017, 177, 384–394. DOI: 10.1016/j.jinorgbio.2017.08.032
38
Li, Y.; Zafar, A.; Kilmartin, P. A.; Reynisson, J.; Leung, I. K. H. Development and Application of an NMR-Based Assay for Polyphenol Oxidases. ChemistrySelect 2017, 2, 10435–10441. DOI: 10.1002/slct.201702144
37
Bhusal, R. P.; Patel, K.; Kwai, B. X. C.; Swartjes, A.; Bashiri, G.; Reynisson, J.; Sperry, J.; Leung, I. K. H. Development of NMR and Thermal Shift Assays for the Evaluation of Mycobacterium tuberculosis Isocitrate Lyase Inhibitors. Med. Chem. Commun. 2017, 8, 2155–2163. DOI: 10.1039/C7MD00456G
36
Yeh, T.-L.; Leissing, T. M.; Abboud, M. I.; Thinnes, C. C.; Atasoylu, O.; Holt-Martyn, J. P.; Zhang, D.; Tumber, A.; Lippl, K.; Lohans, C. T.; Leung, I. K. H.; Morcrette, H.; Clifton, I. J.; Claridge, T. D. W.; Kawamura, A.; Flashman, E.; Lu, X.; Ratcliffe, P. J.; Chowdhury, R.; Pugh, C. W.; Schofield, C. J. Molecular and Cellular Mechanisms of HIF Prolyl Hydroxylase Inhibitors in Clinical Trials. Chem. Sci. 2017, 8, 7651–7668. DOI: 10.1039/C7SC02103H
35
Bhusal, R. P.; Bashiri, G.; Kwai, B. X. C.; Sperry, J.; Leung, I. K. H. Targeting Isocitrate Lyase for the Treatment of Latent Tuberculosis. Drug Discov. Today 2017, 22, 1008–1016. DOI: 10.1016/j.drudis.2017.04.012
34
Santoso, B.; Yanaranop, P.; Kang, H.; Leung, I. K. H.; Jin, J. A Critical Update on the Synthesis of Carboxylated Polymers of Intrinsic Microporosity (C-PIMs). Macromolecules 2017, 50, 3043–3050. DOI: 10.1021/acs.macromol.7b00344
33
Kong, C. H. Z.; Leung, I. K. H.; Sarojini, V. Synthetic Insect Antifreeze Peptides Modify Ice Crystal Growth Habit. CrystEngComm 2017, 19, 2163–2167. DOI: 10.1039/C7CE00232G
32
Huang, R.; Bonnichon, A.; Claridge, T. D. W.; Leung, I. K. H. Protein-Ligand Binding Affinity Determination by the WaterLOGSY Method: An Optimised Approach Considering Ligand Rebinding. Sci. Rep. 2017, 7, 43727. DOI: 10.1038/srep43727
31
Hanauer, T.; Hopkinson, R. J.; Patel, K.; Li, Y.; Correddu, D.; Kawamura, A.; Sarojini, V.; Leung, I. K. H.; Gruber, T. Selective Recognition of the Di/Trimethylammonium Motif by an Artificial Carboxycalixarene Receptor. Org. Biomol. Chem. 2017, 15, 1100–1105. DOI: 10.1039/C6OB02616H
30
Harris, P. W. R.; Cook, G. M.; Leung, I. K. H.; Brimble, M. A. An Efficient Chemical Synthesis of Lassomycin Enabled by an On-Resin Lactamisation/Off-Resin Methanolysis Strategy and Preparation of Chemical Variants. Aust. J. Chem. 2017, 70, 172–183. DOI: 10.1071/CH16499
29
Young, P. G.; Yosaatmadja, Y.; Harris, P. W. R.; Leung, I. K. H.; Baker, E. N.; Squire, C. J. Harnessing Ester Bond Chemistry for Protein Ligation. Chem. Commun. 2017, 53, 1502–1505. DOI: 10.1039/C6CC09899A
28
Huang, R.; Ayine-Tora, D. M.; Muhammad Rosdi, M. N.; Li, Y.; Reynisson, J.; Leung, I. K. H. Virtual Screening and Biophysical Studies Lead to HSP90 Inhibitors. Bioorg. Med. Chem. Lett. 2017, 27, 277–281. DOI: 10.1016/j.bmcl.2016.11.059
27
Zhang, S.; De Leon Rodriguez, L. M.; Lacey, E.; Piggott, A. M.; Leung, I. K. H.; Brimble, M. A. Cyclisation of Linear Tetrapeptides Containing N-Methylated Amino Acids Using 2-Propanephosphonic Acid Anhydride. Eur. J. Org. Chem. 2017, 2017, 149–158. DOI: 10.1002/ejoc.201601016
26
Lindsay, A. C.; Leung, I. K. H.; Sperry, J. Synthesis of the Azepinobisindole Alkaloid Iheyamine A Enabled by a Cross-Mannich Reaction. Org. Lett. 2016, 18, 5404–5407. DOI: 10.1021/acs.orglett.6b02798
25
Chowdhury, R.; Leung, I. K. H.; Tian, Y.-M.; Abboud, M. I.; Ge, W.; Domene, C.; Cantrelle, F.-X.; Landrieu, I.; Hardy, A. P.; Pugh, C. W.; Ratcliffe, P. J.; Claridge, T. D. W.; Schofield, C. J. Structural Basis for Oxygen Degradation Domain Selectivity of the HIF Prolyl Hydroxylases. Nat. Commun. 2016, 7, 12673. DOI: 10.1038/ncomms12673
24
Huang, R.; Leung, I. K. H. Protein-Directed Dynamic Combinatorial Chemistry: A Guide to Protein Ligand and Inhibitor Discovery. Molecules 2016, 21, 910. DOI: 10.3390/molecules21070910
23
Khan, A.; Leśniak, R. K.; Brem, J.; Rydzik, A. M.; Choi, H.; Leung, I. K. H.; McDonough, M. A.; Schofield, C. J.; Claridge, T. D. W. Development and Application of Ligand-Based NMR Screening Assays for γ-Butyrobetaine Hydroxylase. Med. Chem. Commun. 2016, 7, 873–880. DOI: 10.1039/C6MD00004E
22
Hopkinson, R. J.; Leung, I. K. H.; Smart, T. J.; Rose, N. R.; Henry, L.; Claridge, T. D. W.; Schofield, C. J. Studies on the Glutathione-Dependent Formaldehyde-Activating Enzyme from Paracoccus denitrificans. PLoS ONE 2015, 10, e0145085. DOI: 10.1371/journal.pone.0145085
21
Chan, M. C.; Atasoylu, O.; Hodson, E.; Tumber, A.; Leung, I. K. H.; Chowdhury, R.; Gómez-Pérez, V.; Demetriades, M.; Rydzik, A. M.; Holt-Martyn, J.; Tian, Y.-M.; Bishop, T.; Claridge, T. D. W.; Kawamura, A.; Pugh, C. W.; Ratcliffe, P. J.; Schofield, C. J. Potent and Selective Triazole-Based Inhibitors of the Hypoxia-Inducible Factor Prolyl-Hydroxylases With Activity in the Murine Brain. PLoS ONE 2015, 10, e0132004. DOI: 10.1371/journal.pone.0132004
20
Tarhonskaya, H.; Chowdhury, R.; Leung, I. K. H.; Loik, N. D.; McCullagh, J. S. O.; Claridge, T. D. W.; Schofield, C. J.; Flashman, E. Investigating the Contribution of the Active Site Environment to the Slow Reaction of Hypoxia-Inducible Factor Prolyl Hydroxylase Domain 2 With Oxygen. Biochem. J. 2014, 463, 363–372. DOI: 10.1042/BJ20140779
19
Rydzik, A. M.; Leung, I. K. H.; Kochan, G. T.; McDonough, M. A.; Claridge, T. D. W.; Schofield, C. J. Oxygenase-Catalyzed Desymmetrization of N,N-Dialkyl-Piperidine-4-Carboxylic Acids. Angew. Chem. Int. Ed. 2014, 53, 10925–10927. DOI: 10.1002/anie.201406125
18
Scotti, J. S.; Leung, I. K. H.; Ge, W.; Bentley, M. A.; Paps, J.; Kramer, H. B.; Lee, J.; Aik, W.; Choi, H.; Paulsen, S. M.; Bowman, L. A. H.; Loik, N. D.; Horita, S.; Ho, C.-h.; Kershaw, N. J.; Tang, C. M.; Claridge, T. D. W.; Preston, G. M.; McDonough, M. A.; Schofield, C. J. Human Oxygen Sensing May Have Origins in Prokaryotic Elongation Factor Tu Prolyl-Hydroxylation. Proc. Natl. Acad. Sci. U.S.A. 2014, 111, 13331–13336. DOI: 10.1073/pnas.1409916111
17
Rydzik, A. M.; Leung, I. K. H.; Kochan, G. T.; Loik, N. D.; Henry, L.; McDonough, M. A.; Claridge, T. D. W.; Schofield, C. J. Comparison of the Substrate Selectivity and Biochemical Properties of Human and Bacterial γ-Butyrobetaine Hydroxylase. Org. Biomol. Chem. 2014, 12, 6354–6358. DOI: 10.1039/C4OB01167H
16
Tarhonskaya, H.; Szöllössi, A.; Leung, I. K. H.; Bush, J. T.; Henry, L.; Chowdhury, R.; Iqbal, A.; Claridge, T. D. W.; Schofield, C. J.; Flashman, E. Studies on Deacetoxycephalosporin C Synthase Support a Consensus Mechanism for 2-Oxoglutarate Dependent Oxygenases. Biochemistry 2014, 53, 2483–2493. DOI: 10.1021/bi500086p
15
Lingard, H.; Han, J. T.; Thompson, A. L.; Leung, I. K. H.; Scott, R. T. W.; Thompson, S.; Hamilton, A. D. Diphenylacetylene-Linked Peptide Strands Induce Bidirectional β-Sheet Formation. Angew. Chem. Int. Ed. 2014, 53, 3650–3653. DOI: 10.1002/anie.201309353
14
Tarhonskaya, H.; Rydzik, A. M.; Leung, I. K. H.; Loik, N. D.; Chan, M. C.; Kawamura, A.; McCullagh, J. S. O.; Claridge, T. D. W.; Flashman, E.; Schofield, C. J. Non-Enzymatic Chemistry Enables 2-Hydroxyglutarate-Mediated Activation of 2-Oxoglutarate Oxygenases. Nat. Commun. 2014, 5, 3423. DOI: 10.1038/ncomms4423
13
Rydzik, A. M.; Leung, I. K. H.; Thalhammer, A.; Kochan, G. T.; Claridge, T. D. W.; Schofield, C. J. Fluoromethylated Derivatives of Carnitine Biosynthesis Intermediates – Synthesis and Applications. Chem. Commun. 2014, 50, 1175−1177. DOI: 10.1039/C3CC47581F
12
Bush, J. T.; Walport, L. J.; McGouran, J. F.; Leung, I. K. H.; Berridge, G.; van Berkel, S. S.; Basak, A.; Kessler, B. M.; Schofield, C. J. The Ugi Four-Component Reaction Enables Expedient Synthesis and Comparison of Photoaffinity Probes. Chem. Sci. 2013, 4, 4115−4120. DOI: 10.1039/C3SC51708J
11
van Berkel, S. S.; Nettleship, J. E.; Leung, I. K. H.; Brem, J.; Choi, H.; Stuart, D. I.; Claridge, T. D. W.; McDonough, M. A.; Owens, R. J.; Ren, J.; Schofield, C. J. Binding of (5S)-Penicilloic Acid to Penicillin Binding Protein 3. ACS Chem. Biol. 2013, 8, 2112–2116. DOI: 10.1021/cb400200h
10
Leung, I. K. H.; Demetriades, M.; Hardy, A. P.; Lejeune, C.; Smart, T. J.; Szöllössi, A.; Kawamura, A.; Schofield, C. J.; Claridge, T. D. W. Reporter Ligand NMR Screening Method for 2-Oxoglutarate Oxygenase Inhibitors. J. Med. Chem. 2013, 56, 547–555. DOI: 10.1021/jm301583m
9
Henry, L.; Leung, I. K. H.; Claridge, T. D. W.; Schofield, C. J. γ-Butyrobetaine Hydroxylase Catalyses a Stevens Type Rearrangement. Bioorg. Med. Chem. Lett. 2012, 22, 4975–4978. DOI: 10.1016/j.bmcl.2012.06.024
8
Rose, N. R.; Woon, E. C.; Tumber, A.; Walport, L. J.; Chowdhury, R.; Li, X. S.; King, O. N. F.; Lejeune, C.; Ng, S. S.; Krojer, T.; Chan, M. C.; Rydzik, A. M.; Hopkinson, R. J.; Che, K. H.; Daniel, M.; Strain-Damerell, C.; Gileadi, C.; Kochan, G.; Leung, I. K. H.; Dunford, J.; Yeoh, K. K.; Ratcliffe, P. J.; Burgess-Brown, N.; von Delft, F.; Muller, S.; Marsden, B.; Brennan, P. E.; McDonough, M. A.; Oppermann, U.; Klose, R. J.; Schofield, C. J.; Kawamura, A. The Plant Growth Regulator Daminozide Is a Selective Inhibitor of the Human KDM2/7 Histone Demethylases. J. Med. Chem. 2012, 55, 6639–6643. DOI: 10.1021/jm300677j
7
Rydzik, A. M.; Leung, I. K. H.; Kochan, G. T.; Thalhammer, A.; Oppermann, U.; Claridge, T. D. W.; Schofield, C. J. Development and Application of a Fluoride-Detection-Based Fluorescence Assay for γ-Butyrobetaine Hydroxylase. ChemBioChem 2012, 13, 1559–1563. DOI: 10.1002/cbic.201200256
6
Demetriades, M.; Leung, I. K. H.; Chowdhury, R.; Chan, M. C.; McDonough, M. A.; Yeoh, K. K.; Tian, Y.-M.; Claridge, T. D. W.; Ratcliffe, P. J.; Woon, E. C. Y.; Schofield, C. J. Dynamic Combinatorial Chemistry Employing Boronic Acids/Boronate Esters Leads to Potent Oxygenase Inhibitors. Angew. Chem. Int. Ed. 2012, 51, 6672–6675. DOI: 10.1002/anie.201202000
5
Rotili, D.; Altun, M.; Kawamura, A.; Wolf, A.; Fischer, R.; Leung, I. K. H.; Mackeen, M. M.; Tian, Y.-M.; Ratcliffe, P. J.; Mai, A.; Kessler, B. M.; Schofield, C. J. A Photoreactive Small-Molecule Probe for 2-Oxoglutarate Oxygenases. Chem. Biol. 2011, 18, 642–654. DOI: 10.1016/j.chembiol.2011.03.007
4
Leung, I. K. H.; Brown Jr, T.; Schofield, C. J.; Claridge, T. D. W. An Approach to Enzyme Inhibition Employing Reversible Boronate Ester Formation. Med. Chem. Commun. 2011, 2, 390–395. DOI: 10.1039/C1MD00011J
3
Chowdhury, R.; Yeoh, K. K.; Tian, Y.-M.; Hillringhaus, L.; Bagg, E. A.; Rose, N. R.; Leung, I. K. H.; Li, X. S.; Woon, E. C. Y.; Yang, M.; McDonough, M. A.; King, O. N.; Clifton, I. J.; Klose, R. J.; Claridge, T. D. W.; Ratcliffe, P. J.; Schofield, C. J. ; Kawamura, A. The Oncometabolite 2-Hydroxyglutarate Inhibits Histone Lysine Demethylases. EMBO Rep. 2011, 12, 463–469. DOI: 10.1038/embor.2011.43
2
Leung, I. K. H.; Krojer, T. J.; Kochan, G. T.; Henry, L.; von Delft, F.; Claridge, T. D. W.; Oppermann, U.; McDonough, M. A.; Schofield, C. J. Structural and Mechanistic Studies on γ-Butyrobetaine Hydroxylase. Chem. Biol. 2010, 17, 1316–1324. DOI: 10.1016/j.chembiol.2010.09.016
1
Leung, I. K. H.; Flashman, E.; Yeoh, K. K.; Schofield, C. J.; Claridge, T. D. W. Using NMR Solvent Water Relaxation to Investigate Metalloenzyme–Ligand Binding Interactions. J. Med. Chem. 2010, 53, 867–875. DOI: 10.1021/jm901537q
Book Chapters
5
Bonnet, O.; Fa’aui, T.; Leung, I. K. H.; Yi, S.; Zhuang, W.-Q. Challenges and Applications of Laccase in Bioremediation. In Laccase and Polyphenol Oxidase. Biochemistry and Biotechnological Applications; Leung, I. K. H., Ed.; Foundations and Frontiers in Enzymology; Academic Press: London; San Diego, MA; Cambridge, MA, 2024; Chapter 7, pp 153–188.
4
Le Viet, L. H.; Matsuda, T.; Leung, I. K. H. Laccases: Biological Functions and Potential Applications. In Laccase and Polyphenol Oxidase. Biochemistry and Biotechnological Applications; Leung, I. K. H., Ed.; Foundations and Frontiers in Enzymology; Academic Press: London; San Diego, MA; Cambridge, MA, 2024; Chapter 6, pp 133–152.
3
Chan, Y. Y.; Mbenza, N. M.; Chan, M. C.; Leung, I. K. H. Assays to Study Hypoxia-Inducible Factor Prolyl Hydroxylase Domain 2 (PHD2), a Key Human Oxygen Sensing Protein. In Oxygen Sensing, Methods and Protocol; Weinert, E. E., Ed.; Methods in Molecular Biology; Humana: New York, NY, 2023; Vol. 2648, Chapter 12, pp 187–206. DOI: 10.1007/978-1-0716-3080-8_12
2
Huang, R.; Leung, I. K. H. Protein–Small Molecule Interactions by WaterLOGSY. In Biological NMR Part B; Wand, A. J., Ed.; Methods in Enzymology; Academic Press: Cambridge, MA, 2019; Vol. 615, Chapter 14, pp 477–500. DOI: 10.1016/bs.mie.2018.08.020
1
Xiang, L.-W.; Melton, L. D.; Leung, I. K. H. Interactions of β-Lactoglobulin With Small Molecules. In Encyclopedia of Food Chemistry; Melton, L., Shahidi, F., Varelis, P., Eds.; Elsevier: Amsterdam, 2019; Vol. 2, pp 560–565. DOI: 10.1016/B978-0-08-100596-5.21488-1
Edited Books
1
Laccase and Polyphenol Oxidase. Biochemistry and Biotechnological Applications; Leung, I. K. H., Ed.; Foundations and Frontiers in Enzymology; Academic Press: London; San Diego, MA; Cambridge, MA, 2024.
Statistics
Dr Ivanhoe Leung
Senior Lecturer in Biological Chemistry
Dr Ivanhoe Leung is a Senior Lecturer in Biological Chemistry at the University of Melbourne. He attained his undergraduate and doctorate degrees in Chemistry and received postdoctoral training at the University of Oxford. In 2014, he joined the University of Auckland as a Lecturer in Chemical Biology. He was promoted to Senior Lecturer in 2017, and to Senior Lecturer (over the bar) in 2019. Dr Leung was recruited to the University of Melbourne through the Driving Research Momentum scheme in 2021.
Professional Appointments
▪ 2021–: Senior Lecturer, The University of Melbourne
▪ 2014–2021: Lecturer/Senior Lecturer, The University of Auckland
▪ 2012–2014: Postdoctoral Research Assistant, University of Oxford
Academic qualifications
▪ 2008–2013: D.Phil Chemistry, University of Oxford
▪ 2003–2007: M.Chem Chemistry, University of Oxford
Distinctions and Awards
▪ 2024: Welcome Award, Royal Australian Chemical Institute (RACI)
▪ 2024: Supervisor of the Year Award, RACI Victoria Branch Chemistry
▪ 2021: Selby Research Award, Selby Scientific Foundation
▪ 2019: Early Career Research Excellence Award, The University of Auckland
▪ 2019: JSPS Hope Fellow, Japan Society for the Promotion of Science
▪ 2019: Associate Investigator, Maurice Wilkins Centre
Research Leadership
▪ Chair of Research, School of Chemistry, The University of Melbourne (2024–)
▪ Board of Directors, Australian & New Zealand Society for Magnetic Resonance (2024–)
▪ President, Melbourne University Chemical Society (MUCS) (2023–)
▪ Committee Member, RACI Green and Sustainable Chemistry Division (2022–)
▪ Associate Editor, Frontiers in Chemistry (2022–)
▪ Deputy Director, Centre for Green Chemical Science (2018–2021)
▪ Chair, New Zealand Institute of Chemistry (NZIC) Auckland Branch (2018–2019)
▪ Editorial Board Member, Scientific Reports (2018–)
Dr Glenda Vasku
Postdoctoral Research Fellow
Glenda obtained her PhD in analytical chemistry from the Université de Bourgogne, where she developed her expertise in lipidomics, metabolomics and cutting-edge hyphenated techniques that include HPLC, UPLC, SFC MALDI, and GC mass spectrometry. She is now studying bacteria-host interactions between humans and Mycobacterium tuberculosis.
Evelyn Huang
PhD candidate
Evelyn completed her Master of Industrial Research in Chemistry at the University of Melbourne, where she collaborated with industry in a project to manage volatile organic compounds in paint systems. Her current project involves the protein-level regulation of Mycobacterium tuberculosis isocitrate lyase.
Francis Kuang
PhD candidate
Francis completed his Master of Drug Discovery and Development at the Victoria University of Wellington. In his MDDD project, Francis developed a genomic driven approach to identify biosynthetically gifted actinomycetes from New Zealand mangrove samples. His current project aims to decipher the mechanism and regulation of 1-aminocyclopropane-1-carboxylic acid oxidase.
Madison Nuske
PhD candidate
Madie obtained her Bachelor of Science and Master’s degree in Chemistry at the University of Melbourne. She is developing and utilising mass spectrometry and omics methods to explore biological questions about lipids, proteins and their interactions.
Chai Xin Yu
PhD candidate
Chai Xin completed her Master of Research in Medicinal Chemistry at the Universiti Putra Malaysia on repurposing drugs for dengue using computer-aided drug design methods. She also has some work experience at a pharmaceutical company in drug formulation development and provided technical support in upscale drug production. Her current project involves the study of post-translational regulation of isocitrate lyase and isocitrate dehydrogenase in Mycobacteria tuberculosis.
Xiaoxu Chen
PhD candidate
Xiaoxu completed her Master’s degree in Biochemistry and Molecular Biology at the University of Chinese Academy of Sciences, where she measured weak interactions within proteins and studied protein allostery in cells. Her current project focuses on the catalytic mechanisms of isocitrate lyase from Mycobacteria tuberculosis.
Buster (Haozhe) Wu
MSc candidate
Buster completed his undergraduate studies in Chemistry at Fudan University. He is now working on the molecular mechanism of isocitrate dehydrogenase in the TB team.
Wenqiao Man
MSc candidate
Wenqiao completed his undergraduate studies in Polymer Material and Engineering at Harbin Institute of Technology. He is currently pursuing a Master’s degree in Chemistry under the joint supervision of Drs Alex Duan and Ivanhoe Leung. He is now focusing on PVC recycling using microwave hydrolysis followed by pyrolysis.
Craeg Casals
MSc candidate
Craeg completed his Bachelor of Science degree in Molecular Biology and Applied Chemistry in La Trobe University. Currently, he is pursuing his Master’s degree in Chemistry under the supervision of Drs John Karas and Ivanhoe Leung. His research investigates the stabilisation of enzymes for biocatalysis.
Catur Kurniawan
MSc candidate
Catur obtained his Bachelor’s degree from the State University of Medan, Indonesia. He is currently pursuing a Master’s degree in Chemistry under the joint supervision of Drs Ludovica Monti and Ivanhoe Leung. His research project focuses on finding inhibitors for the ACC oxidase enzyme.
Past members
Past members of the Leung Research Group and their completion years are listed below.
Postdoctoral Research Fellow
The University of Melbourne
▪ Dr Brooke Kwai, 2022
The University of Auckland
▪ Dr Aimee Son, 2019
▪ Dr Yu Li, 2018
Doctor of Philosophy – PhD
The University of Auckland
▪ Dr Vicky Juan, 2023
▪ Dr Renjie Huang, 2023
▪ Dr Brooke Kwai, 2022
▪ Dr Eva Antony, 2022
▪ Dr Nabangshu Sharma, 2021
▪ Dr Ryan Dixon, 2021
▪ Dr Naasson Mbambi Mbenza, 2020
▪ Dr Jinal Patel, 2020
▪ Dr Dona Gunawardana, 2020
▪ Dr Praveen George Vadakkedath, 2020
▪ Dr Oi Wei Mak, 2020
▪ Dr Danilo Correddu, 2019
▪ Dr Ram Bhusal, 2018
▪ Dr Yu Li, 2017
Master of Science – MSc
The University of Melbourne
▪ Benjamin Harris, 2024
▪ Kallet Zhou, 2023
▪ Jinpeng Zhou, 2023
▪ Junlang Zhong, 2023
The University of Auckland
▪ Simran Kaur, 2019
▪ Renjie Mike Huang, 2017
Bachelor of Science (Honours) – BSc(Hons)
The University of Melbourne
▪ Patrick Bajan, 2023
The University of Auckland
▪ Mark-Anthony McLarin, 2019
▪ Brooke Kwai, 2017
▪ Nawal Nasarudin, 2016
▪ Dona Gunawardana, 2016
▪ M. Nasri Muhammad Rosdi, 2015
Postgraduate Diploma in Science – PGDipSci
The University of Auckland
▪ Weijing Sun, 2020
▪ Renjie Mike Huang, 2015
Summer Research Scholars
The University of Melbourne
▪ Le Thao Anh Nguyen, 2024
▪ Sarah Tynan, 2023
▪ Tricia Lee, 2022
The University of Auckland
▪ Daniel Bousfield, 2020
▪ José de Jesús Montaño López, 2018
▪ Jane Pernes, 2017
▪ Johanna Viluma, 2017
▪ Amy Lai, 2017
▪ Paris Watson, 2016
Undergraduate Project Students
The University of Melbourne
▪ Biechunzi Liu, 2024
▪ George Ye, 2024
▪ Gabriel Chan, 2023
▪ Andrew Yerondais, 2023
▪ YuTao Zhou, 2022
▪ Devia Rachmat Kurniawan, 2022
Visitors/Volunteers
The University of Melbourne
▪ Yingqi Lai, 2024
▪ Ka Ki Leung, 2024
▪ Simran Kaur, 2023
▪ Lan Huong Le Viet, 2023
▪ Anu Sharma, 2023
▪ Dr Tianyang Liu, 2023
▪ Michael Valens Soegianto, 2023
The University of Auckland
▪ Cathy Yin, 2020
▪ Misha van Merrienboer, 2019
▪ Esmée Van Tol, 2019
▪ Ravi Tej Allam, 2017
▪ Thomas Hanauer, 2015
News
Stay updated with the latest news about our research by visiting our research group website or following us on X: @Leung_Group.
Opportunities and Funding
Postdoctoral Research
At this time, we do not have any available postdoctoral positions. However, applicants interested in applying for their own funding are welcome to contact Dr Ivanhoe Leung for informal enquiries.
PhD Studies
For those considering PhD studies, informal enquiries can be directed to Dr Ivanhoe Leung via email. The University of Melbourne has stringent entry requirements for its PhD program. Detailed information can be found on the University website.
PhD candidates are typically funded by the Melbourne Research Scholarship (MRS) or the Research Training Program (RTP) Scholarship. If you are a new student and have applied for a graduate research course (e.g., PhD) by the application closing date, you will be automatically considered for these scholarships. Further details about these scholarships are available on the University’s scholarship page.
MSc (Chemistry) and BSc (Honours) Studies
If you are interested in pursuing your Honours or Master’s research project within our group, please reach out to Dr Ivanhoe Leung via email for more information. Please note that we generally do not accept MPhil students into our research group.
Summer Projects
Currently, we do not have any summer research positions available. However, applicants with their own funding may contact Dr Ivanhoe Leung for informal enquiries.
Contact Details
Bio21 Molecular Science & Biotechnology Institute
The University of Melbourne
30 Flemington Rd
Melbourne
VIC 3010
Email: ivanhoe.leung@unimelb.edu.au
X: @Leung_Group
Useful Links and Information
▪ School of Chemistry
▪ Bio21 Molecular Science & Biotechnology Institute
▪ Doctor of Philosophy – Science
▪ Master of Science (Chemistry)
▪ Bachelor of Science (Degree with Honours)
▪ Scholarships at the University of Melbourne